Author

Alexander Kurilshikov 1

1 University Medical Center Groningen,Groningen,Netherlands

ANALYSIS OF 1792 GUT METAGENOMES REVEALS MICROBIAL TREATMENT TARGETS FOR INFLAMMATORY BOWEL DISEASE AND IRRITABLE BOWEL SYNDROME

Arnau Vich Vila, Floris Imhann, Valerie Collij, Thomas Gurry, Alexander Kurilshikov, Soesma Jankipersadsing, Zlatan Mujagic, Marc-Jan Bonder, Xiaofang Jiang, Lude H. Franke, Gerard Dijkstra, Eleonora Anna Margaretha Festen, Jing Fu, R. Xavier, Eric Alm, Cisca Wijmenga, Daisy Mae Jonkers, Alexandra Zhernakova, Rinse K. Wee

Combining absolute quantification of fecal bacteria with metagenomic sequencing data improves the characterization of the gut microbiome of patients with Crohn's disease

Arnau Vich Vila, Anna Boddeke, Alexander Kurilshikov, Valerie Collij, Paula Sureda Horrach, Julius Z. H. von Martels, Arno R. Bourgonje, Marjolein Anthonia Ymkje Klaassen, Shixian Hu, Dianne B.H Jansen, Klaas Nico Faber, Gerard Dijkstra, Alexandra Zhernakova, Hermie J. M. Harmsen, Rinse K. Weersma

GLUTEN-FREE DIET INFLUENCES THE HUMAN GUT VIROME COMPOSITION

Sanzhima Garmaeva, Anastasia Gulyaeva, Trishla Sinha, Andrey Shkoporov, Adam G Clooney, Stephen R Stockdale, Karen M Daly, Lorraine A Draper, Cisca Wijmenga, Alexander Kurilshikov, Jingyuan Fu, Colin Hill, Alexandra Zhernakova

Gut microbial co-abundance networks identify functional hubs for inflammatory bowel disease and obesity

Lianmin Chen, Valerie Collij, Martin Jaeger, Inge van de Munckhoff, Arnau Vich Vila, Alexander Kurilshikov, Ranko Gacesa, Trishla Sinha, Marije Oosting, Leo A Joosten, Joost Rutten, Niels Riksen, Ramnik J. Xavier, Folkert Kuipers, Cisca Wijmenga, Alexandra Zhernakova, Mihai Netea, Rinse K. Weersma, Jingyuan Fu

HOST-GENETICS, DYSBIOSIS AND CLINICAL HISTORY EXPLAINS FECAL METABOLIC ALTERATIONS IN PATIENTS WITH INFLAMMATORY BOWEL DISEASE

Arnau Vich Vila, Shixian Hu, Laura Bolte, Valerie Collij, Bernadien H. Jansen, Renate A.A. Ruigrok, Galeb Abu-Ali, Cosmas Giallourakis, Jessica Schneider, John Parkinson, Amal Al Garawi, Alexander Kurilshikov, Ranko Gacesa, Jingyuan Fu, Alexandra Zhernakova, Rinse K. Weersma

Impact of 41 commonly used drugs on the composition, metabolic function and resistome of the gut microbiome

Arnau Vich Vila, Valerie Collij, Serena Sanna, Floris Imhann, Trishla Sinha, Zlatan Mujagic, Daisy Mae Jonkers, Ad A Masclee, Jingyuan Fu, Alexander Kurilshikov, Cisca Wijmenga, Alexandra Zhernakova, Rinse K. Weersma

LIFELINES NEXT PILOT: EARLY DEVELOPMENT OF THE GUT BACTERIOME AND VIROME AND THEIR INTERACTIONS

Trishla Sinha, Sanzhima Garmaeva, Lianmin Chen, Anastasia Gulyaeva, Soesma Jankipersadsing, Jackie Dekens, Johanne Spreckels, Ranko Gacesa, Alexander Kurilshikov, Cisca Wijmenga, Jinguan Fu, Alexandra Petrovna Zhernakova

Microbiome and fecal biomarkers can diagnose and classify inflammatory bowel disease

Ranko Gacesa, Arnau Vich Vila, Valerie Collij, Floris Imhann, Cisca Wijmenga, D.M.A.E (Daisy) Jonkers, Alexander Kurilshikov, Jingyuan Fu, Alexandra Zhernakova, Rinse K. Weersma

Strain level analysis of Klebsiella pneumonia shows association with Inflammatory Bowel Disease and disease severity

Ranko Gacesa, Arnau Vich Vila, Valerie Collij, Floris Imhann, Alexander Kurilshikov, Jingyuan Fu, Cisca Wijmenga, Alexandra Zhernakova, Peter McLean, Cosmas Giallourakis, Jessica Schneider, Rinse K. Weersma

THE DUTCH MICROBIOME PROJECT: DEFINING THE (UN)HEALTHY GUT MICROBIOME AND ITS DETERMINING FACTORS IN 9000 METAGENOMES

Ranko Gacesa, Alexander Kurilshikov, Arnau Vich Vila, Valerie Collij, Shixian Hu, Laura Bolte, Trishla Sinha, Lianmin Chen, Sergio Andreu-Sánchez, Marjolein Anthonia Ymkje Klaassen, Virissa C. Lenters, Floris Imhann, Dianne Jansen, Jody Gelderloos-Arends, Roel C.H. Vermeulen, Serena Sanna, Hermie Hansen, Cisca Wijmenga, J

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